Natural Language Processing / Information Extraction (NLP/IE) Program

biomedicus2

Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.

biomedicus

BioMedICUS: A biomedical and clinical NLP engine.

nlp-adapt

Virtual machine that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

Workshop_large_scale_nlp

AIME 2020 Tutorial 2/AMIA 2019 W22: Large Scale Ensembled NLP Systems with Docker and Kubernetes

clinical-sentences

mtap

MTAP: A framework for distributed text analysis using gRPC and microservices-based architecture.

biomedicus-measures

A lightweight (small and dependency-free) Java 8 library for identifying and normalizing numbers and measurements in text.

nlptab

A system for integration and visualization of diverse biomedical NLP applications.

lexical_gazetteer

nlp-ensemble-explorer

A framework for creating and evaluating NLP system ensembles

amicus

The Amicus Metasystem for Interoperation and Combination of UIMA Systems

biomedicus-rtf

Implementation of Rich Text Format (RTF) parsing from the Biomedicus text analysis system.

nlptab-webapp

spellgen

modeldeid

De-identification for co-occurrence models

nlp-adapt-kube

Kubernetes cluster that supports NLP workflow to generate and interrogate artifacts from various annotator systems.

biomedicus-dlserver

A simple python wsgi application using the Bottle framework to serve downloads while checking NLM UTS licenses for UMLS eligibility.

biomedicus-gpl

GPL licensed extensions for the BioMedICUS project.

biomedicus-tokenizer

A lightweight (small and dependency-free) Java 8 library for Penn-like tokenization.

combo_searcher

Apriori implementation to generate exhaustive set of boolean expressions.

dkpro-cassis

UIMA CAS processing library written in Python

icando-surgical-acp

jupyter

Collection of various notebooks

mtap-python-api

Github pages Python API docs for nlpie/mtap.

nlpie.github.io

NLP-IE Group Organization Site

pier-next

NLP-PIER front-end, controllers, services, APIs

python-tokenizer

restful-tokenizer-api-python-flask

Simple Flask REST API in docker container providing tokenization service

stomp.py-amq

ActiveMQ messsaging via stomp.py with db reader/writer

word2vec-api

Simple web service providing a word embedding model