Nikolai Karpov's repositories
editdistancek
LMS algorithm for computing edit distance with SIMD optimizations
Language:KotlinMIT000
herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
Language:RustNOASSERTION000
KSummaries
Library of mergeable summaries
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Language:RustMIT000
StreamingCC
A C++ library for summarizing data streams
Language:C++000
tree-similarity
Library for tree similarity algorithms and queries.
MIT000
whatshap
Read-based phasing of genomic variants, also called haplotype assembly
Language:C++MIT000