Nat Kinsky's repositories
analysis-tools
Code for reading data saved by the Open Ephys GUI
buzcode
Code for internal lab sharing - polishing has started but is by no means complete
CellExplorer
CellExplorer is a graphical user interface (GUI) and standardized pipeline for exploring and characterizing single cells acquired with extracellular electrodes
CNMF_E
Constrained Nonnegative Matrix Factorization for microEndoscopic data
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals
DeepSqueak
DeepSqueak: A Deep Learning Based System for Quantification of Ultrasonic Vocalizations
GPSfun
My attempt to have fun with GPX data.
gpxpy
gpx-py is a python GPX parser. GPX (GPS eXchange Format) is an XML based file format for GPS tracks.
ImageAlt
Scripts for analyzing endoscope data, focusing on spatial alternation sessions.
ImageTreadmill
Imaging experiments using treadmill running
minian
miniscope analysis pipeline with interactive visualizations
Miniscope-DAQ-QT-Software
Software for streaming and controlling neural and behavioral data from freely behaving animals
npy-matlab
Experimental code to read/write NumPy .NPY files in MATLAB
Opto
uLED Opto project code
osc1lite
optical stimulation controller - lite edition (12 channels w/ COTS DACs)
Place-stimulation
Code to provide place specific optogenetic stimulation on the linear track
pomidaq
Portable Miniscope Data Acquisition
scopix
Eichenbaumers working on the Schniterscope project in matlab
sleep_loss_hippocampal_replay
NK fork of sd_paper repository
spyking-circus
Fast and scalable spike sorting in python
test
test depository
TraceFC
Trace Conditioning Imaging + Ephys related code