Beifang Niu's Lab

msisensor2

Microsatellite instability (MSI) detection for tumor only data.

msisensor-ct

Microsatellite instability (MSI) detection for cfDNA samples.

gclust

genome sized sequences clustering

docker-flt3-itd

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

DIVIS

integrated and customisable pipeline of cancer genome sequencing analysis

MetaGeneConsensus

PTRBC

hcp547

杂交捕获测序pannel数据分析流程

joinx

a tool for processing .bed and .vcf files

LarGo-annotator

Large Scale Genome Annotator

VarDictCpp

This is a implementation of VarDictJava with C++.

bioconda-recipes

Conda recipes for the bioconda channel.

calcRoiCovg

fr-hit

GPyFlow-CLI

a light way to run workflow

GPyFlow-Visual

edit workflow on web browser

GPyFlow-Workflows

a workflow platform to share workflow

hotspot3d

3D hotspot mutation proximity analysis tool

LarGo

Large Scale Genome assembler

msisensor2-py

Microsatellite instability (MSI) detection tool of python version for tumor only data .

MuSiC2

identifying mutational significance in cancer genomes

Niu-Lab_Web-Portal

Creating initial version of our lab's web portal.

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.