nityendra21

learning_vcf_file

Learning the Variant Call Format

SNP_notes

Notes on SNP-related tools and genome variation analysis

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Utilities

General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)

wesanderson

A Wes Anderson color palette for R

cc20

covid-india

BandageNG

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

ggstream

A package to make streamplots

oddgenes

A small database of weird gene annotations

Kitsune

Stream anime with no Ads

abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

MicrobiomeBestPracticeReview

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

cs-video-courses

List of Computer Science courses with video lectures.

ModEngine2

Runtime injection library for modding Souls games. WIP

covid-19-data

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

100-Days-Of-ML-Code

100 Days of ML Coding

setu

SARS-CoV-2 Genome Assembler

KAT

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

BWISE

de Bruijn Workflow using Integral information of Short pair End reads

MetaCarvel

MetaCarvel: A scaffolder for metagenomes