Nirwan Tandukar's repositories
alphafold
Open source code for AlphaFold.
COMP_GWAS
Easy combination of SNP pvalues from GWAS data using GBJ package
conda_r_skeleton_helper
Cleaning up Conda r-packages
ggBLUP
genomic prediction for gwas using SNPs and phenotype
GMStool
ggBLUP, random forest, CNN, DNL phenotype prediction
metashape
Workflow for Metashape
gwas-phenoprediction
GWAS phenotype prediction from SNP's
GWAS_tutorial
R for Plant Breeding is open source resource to lear the Plant Breeding and Genetics related data analysis and visualizations
HiddenMarkovModel
Code for the Hidden Markov Model Tutorial Series
Illumina_PacBio_Hybrid
This github page defines the workflow for the joint analysis for Illumina and PacBio sequences
metashape-1
Easy, reproducible Metashape photogrammetry workflows
MKLMM-pheno.prediction
Multi Kernel Linear Mixed Models for Complex Phenotype Prediction-forked from omerwe/MKLMM
MSDIAL-tutorial
A workflow for MSDIAL
nirwan1265
Config files for my GitHub profile.
Parallelizing
R code for parallelizing scripts to run on multiple cores
Phenotype_Prediction_Pipeline
Regression to infer an 'omic'-phenotype association
sampling
Some methods to sampling data points from a given distribution.
Semi-Global-Alignment-Bioinformatics-Course
Semi-global Alignment
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA