Niraj Khemka's repositories
applied-ml
📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.
bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
EpimiRNA
Code and data related to EpimiRNA network analysis
github-slideshow
A robot powered training repository :robot:
kdd2014
kdd2014PrizeWinner
Network-analysis
Network analysis of biological data obtained from different sources such as Protein , Gene regulatory network , Metabolic ..
NGS
NGS data analysis codes
pattern_classification
A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks
phylogenomics
Phylogenomics analysis of whole genome data
R_scripts_for_common_analysis
Some common R scripts which can be used for different purpose
rna-seq-diff-exprn
RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code and plots, differential expression (via DESeq and NOISeq), structural variant detection (e.g. fusion genes, via SVDetect) and differential exon usage (via DEXSeq).
scireader
Monitor and display new content from scientific journals.
scrapy
Scrapy, a fast high-level screen scraping and web crawling framework for Python.
script
common script for bioinformatics analysis
Scripts
Scripts developped over time and (sometimes) still usefull
sgn-home
per-developer versioned home directories for miscellaneous work
Short_script
Scripts commonly used in bioinformatics analysis NGS data
Spoon-Knife
This repo is for demonstration purposes only.
utils4bioinformatics
Little code snippets that do (hopefully) useful things
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities