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nipreps / smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

Home Page:https://nipreps.github.io/smriprep

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Myelin maps (T1w/T2w)

effigies opened this issue · comments

commented

Some users are interested in myelin maps. This should not be difficult. A good idea would be to study the HCP implementation and see what exactly they're doing to keep outputs comparable.

https://github.com/Washington-University/HCPpipelines/blob/3145a16e288881aab9b0ec57aea596265d86e18c/PostFreeSurfer/scripts/CreateMyelinMaps.sh#L132-L172

commented

cc @ericfeczko If there are any issues DCAN have run into that we should be aware of.

commented

I vaguely recall there being a pseudo-transmit field bias correction described in Glasser et al. (2022) that isn't in the HCPpipelines repo yet.