Gang Yao's repositories
AnnotSV
Annotation and Ranking of Structural Variation
adotto-smk
A snakemake based pipeline to build Adotto TR databases
agoTRIBE
agoTRIBE 在单细胞中检测整个转录组的 microRNA-目标相互作用
Ancestry_HMM-S
Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
ArchaicSeeker2.0
Detecting archaic introgression sequences and reconstructing introgression history.
CandiHap
A haplotype analysis toolkit for natural variation study.
coalNN
Convolutional neural network for TMRCA and allele age inference.
DASweepDetect
Detection and classification selective sweep use domain adaptive model
DNAGPT
A Generalized Pre-trained Tool for Versatile DNA Sequence Analysis Tasks
EVA
EVA Series: Visual Representation Fantasies from BAAI
fastenloc
Colocalization analysis of genetic association signals
geosphere
R geosphere package
GSAT
Graph-based Sequence Assembly Toolkit
Helixer
Using Deep Learning to predict gene annotations
HERO
Hybrid error correction approach for long reads using overlap graph
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
lncHOME_analysis
lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locations and patterns of RNA binding protein (RBP) binding sites.
LTR_Stream
Reconstructing evolutionary trajectories for LTR-RTs in closely related species and identifying genome (or sub-genome) specific genetic LTR-RT markers for genomic comparison and phylogeny inferring.
Mash
Fast genome and metagenome distance estimation using MinHash
mesh
Mesh TensorFlow: Model Parallelism Made Easier
pdfplumber
Plumb a PDF for detailed information about each char, rectangle, line, et cetera — and easily extract text and tables.
raven
De novo genome assembler for long uncorrected reads
regioners
A rust implementation of regioneR for interval overlap permutation testing
safari
Hyena Hierarchy: Towards Larger Convolutional Language models
scSNV-seq
scSNV-seq
SVision-pro
Identificaion of structural variants with neural network
sweed
Likelihood-based Selective Sweep Detection
syngraph
Toolkit for evolutionary analyses of linkage groups
TERL
Transposable Elements Representation Learner (TERL)
wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly