Ning Liu's repositories
awesome-HiC
Awesome list of HiC data analysing tools
RNAgenopipe
A pipeline to analysis RNA-seq data and impute Genotype from RNA-seq.
3DFAACTS-SNP
Here is the source code for 3DFAACT-SNP workflow
awesome
:sunglasses: Curated list of awesome lists
awesome-asyncio
A curated list of awesome Python asyncio frameworks, libraries, software and resources
BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
CustomHi-CPipeline
The custom Hi-C pipeline
FeatureCount2GCT
This is a script to convert the output from FeatureCount to GCT format expression tables
fithic
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
HiCUP_report_for_thesis
The HiCUP html reports for the publicly available HiC-seq datasets
HiCvisualisation
Some visualisation functions developed for Hi-C data
lipidr
Data Mining and Analysis of Lipidomics datasets in R
markdown-toc
Generate a markdown TOC (table of contents) for a README or any markdown files, using remarkable. Used by assemble, verb, and lots of other projects on GitHub. API and CLI.
msigdb
A R/Bioconductor ExperimentHub package to access gene expression signatures in the Molecular Signatures Database (MSigDB).
resume
resume
sim3C_hic_split
Python script to split a simulated hic paired-end fastq file into R1 and R2.
vissEServerRpkg
Backend R package for visse.cloud