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Nilesh Kumar (Ph.D) (nilesh-iiita)

nilesh-iiita

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Company:University of Alabama at Birmingham

Location:1720 University Blvd, Birmingham, AL 35294

Home Page:https://scholars.uab.edu/13757-nilesh-kumar/publications

Twitter:@nilesh_uab

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Nilesh Kumar (Ph.D)'s repositories

Mr_kumar

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biopig

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breakdancer

SV detection from paired end reads mapping

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calc-roi-covg

Given two BAM files, a reference sequence, and regions of interest, count the AT, CG, or CpG sites with sufficient read-depth in both BAMs.

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d3-chord-diagrams

Example Chord Diagrams in D3

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DIAMOnD

DIseAse MODule identification algorithim

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ete

ETE is a Python programming toolkit for building, comparing, annotating, manipulating and visualising trees. It provides both a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

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free-programming-books

:books: Freely available programming books

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galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.

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gooddata-js

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icoshift

A versatile tool for the rapid alignment of 1D NMR spectra

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iptux

A software for sharing in LAN

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kaks-calculator

Automatically exported from code.google.com/p/kaks-calculator

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KGML

Python code to parse, manipulate, download, and visualise KGML (KEGG markup language) biological pathway data.

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LMM-Formula-Calculator

Formula Calculator for accurate masses using a low-mass moiety algorithm. Developed in C/C++, the source code was originally the HR2 program used in the Seven Golden Rules paper.

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MBB-Bio-Roll

Extended bioinformatics roll for the Rocks cluster

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MirtronP

Mirtronp : Mirtron Prediction Tool

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ml-benchmarks

Benchmarks for various machine learning packages

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new

Mirtron Prediction Tool

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PASApipeline

PASA software

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plotly

Create interactive web graphics from R via plotly's JavaScript graphing library

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Practical-Machine-Learning

Notes and code from Practical Machine Learning course slides

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pysam

Automatically exported from code.google.com/p/pysam

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pysb

Python framework for Systems Biology modeling

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PythonCyc

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Ribosome-Binding-Site-Calculator-v1.0

The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and design synthetic RBS sequences to rationally control the translation initiation rate. It is used to design synthetic biological systems.

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rnaplot

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SeqPeek

SeqPeek Visualization

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sire

Automatically exported from code.google.com/p/sire

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yapf

A formatter for Python files

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