Nico Chung's repositories
affiliation_parser
Simple python parser for MEDLINE, Pubmed OA affiliation string
2vcf
www.openb.io/2vcf convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
Language:GoMIT000
bash-lib
Library for bash utility methods and tools
Language:ShellApache-2.0000
bioinformatics_primer
Bioinformatics with Unix, bash, Make, Python, and parallel
Language:PythonMIT000
checkVCF
Sanity check Variant Call Format (VCF) files.
Language:Python000
datasharing
The Leek group guide to data sharing
000
loopseq
Analysis for LoopSeq 16S manuscript
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men
Male Egg Number model for Chung et al. 2019 Oikos
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microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Language:PythonGPL-3.0000
navi
An interactive cheatsheet tool for the command-line and application launchers
Language:RustApache-2.0000
ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
Apache-2.0000
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
Language:R000