Nick Noel Machnik's repositories
codon-degeneracy
Routines for the extraction of degenerate sites and calculation of numbers of neutral substitutions from sequences and alignments.
fastatools
Command line tools for indexing, parsing and manipulating FASTA files.
google-kickstart
Solutions for Google Kick Start problems
AoC-2021-Rust
My advent of code solutions for 2021
AoC-solutions
Solutions for Advent of Code puzzles.
CoffeeBuddyBot
An email bot that sends notifications to members of a social group about their coffee buddy of the week.
expected-levenshtein
Empirically determined approximate values for levenshtein distances between random strings.
keep-in-touch
A command line organizer that helps you remember to call your friends.
AoC2022
My AoC solutions for 2022
avablast
Small tool that makes the submission of all-vs-all BLAST jobs more convenient .
bedvec
Testing ground for parallel processing of genotype data stored in PLINK .bed format
benchmark-eigen-inverse
A small C++ program that measures time taken by Eigen's matrix inverse computation.
cpp-hmc
Testing ground for a hamiltonian monte carlo implementation in c++.
fasta-rs
A rust lib for parsing and manipulating files in fasta format.
hmc-first-steps
Implementations of the Hamiltonian Monte Carlo scheme for educational purposes
hydra-docker
Dockerfile for creating image containing compiled Hydra
NUTS
python version of the No-U-Turn Sampler (NUTS) from Hoffman & Gelman, 2011
pfam2go-sqlite
Pfam, Gene Ontology and UniProt mappings in SQLite
py-gen-bed
Generate random genotype matrices in PLINK .bed format in python
sigmoidal-growth
A simple python library for finding the maximal slope in approximately sigmoidal growth curves.
statgen-essentials-rs
An attempt to implement operations that are essential for statistical genomics in Rust.