nicholasjclark

mvgam

{mvgam} R 📦 to fit Dynamic Bayesian Generalized Additive Models for time series analysis and forecasting

physalia-forecasting-course

Ecological forecasting using Dynamic Generalized Additive Models with R 📦's {mvgam} and {brms}

MRFcov

Markov random fields with covariates

portal_VAR

R code to replicate analyses in Clark et al in review (Forecasting rodent population dynamics with dynamic Generalized Additive Models)

phylo_func_trends

Using phylogenetic and functional relationships to inform nonlinear trend estimates from long-term biodiversity data

ASC_talk

A talk on timeseries analysis and forecasting with the {mvgam} R 📦 for the 2023 Australian Statistical Conference

mvforecast

Tools to fit, interrogate and forecast multivariate statistical and machine learning timeseries models

EFI_seminar

A seminar on ecological forecasting with the {mvgam} R 📦 for the Ecological Forecasting Initiative

Mediterranean-Fishes-MRF

R code to reproduce analyses in "Rapid winter warming could disrupt coastal marine fish community structure" (Clark et al, Nature Climate Change, 2020)

phylo_smoothing

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

BBS.occurrences

Effects of landcover on avian community ecology

bootnet

Bootstrap methods for various network estimation routines

CV

Nicholas J Clark curriculum vitae

EF_Activities

Hands-on activities associated with the Ecological Forecasting book and graduate class

GAMbler

The GAMbler blog

LandcoverMODIS

Functions for downloading and processing MODIS Land_Cover_Type_1 data

malaviR

An R interface to MalAvi

marginaleffects

R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.

nicholasjclark

nmixture_mvgam

Dynamic GAM N-mixture simulations

pfilter_mvgam

Particle filtering code from original mvgam submission; not currently supported

QUT_seminar

A seminar on ecological forecasting with the {mvgam} R 📦

rethinking

Statistical Rethinking course and book package

rweekly.org

R Weekly

spatialepi_website

Github repository for our research group's website

TickBenchmarkEns

twitter-blogdown

Fetching Twitter messages daily and turn them into a website based on blogdown

TwitterParasites

Track public mentions of ectoparasites

website

Hugo source code for the QERC website