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Nicholas Owen (nicholas-owen)

nicholas-owen

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Company:University College London / ARC - Advanced Research Computing

Location:London

Twitter:@Dr__NO

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Nicholas Owen's starred repositories

rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

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umap

Uniform Manifold Approximation and Projection

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r4ds

R for data science: a book

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bookdown

Authoring Books and Technical Documents with R Markdown

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destreamer

Save Microsoft Stream videos for offline enjoyment.

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scanpy

Single-cell analysis in Python. Scales to >1M cells.

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stats-illustrations

R & stats illustrations by @allison_horst

License:CC-BY-4.0Stargazers:1806Issues:106Issues:11

golem

A Framework for Building Robust Shiny Apps

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rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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awesome-nextflow

A curated list of nextflow based pipelines

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heatmaply

Interactive Heat Maps for R Using plotly

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atac-seq-pipeline

ENCODE ATAC-seq pipeline

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plotgardener

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vt

A tool set for short variant discovery in genetic sequence data.

Language:CLicense:MITStargazers:189Issues:13Issues:105

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

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ATAC-seq

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rorcid

:warning: ARCHIVED :warning: A programmatic interface the Orcid.org API

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meetingsR

A list of R conferences and user groups

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rnabio.org

website for the rnaseq course

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pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

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scrna2019

supporting code for the multinomial single cell RNA-Seq paper

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JUDI

This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many parameter settings. Bioinformatics pipeline: Just Do It!

Language:PythonLicense:MITStargazers:33Issues:17Issues:2

RNArtistCore

A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.

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ShinyOmics

Exploration of Omics data

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healthecon_shiny

Repository for an academic paper, tutorial and code related to the application of web application user interfaces to health economics.

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iscandar

Interactive reporting tool for single cell RNA-seq data.

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SCEGallery

Pretty plotting for SCE objects.

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superTranscript_paper_code

This repository contains code and scripts used to generate and analyse data for the superTranscript/Lace paper.

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variant_prioritization

Workflows taking Exome/WGS fastq files to prioritized variants

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CodeClub

Repository for all things IHI CodeClub

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