CircNetVis is an interactive web application for visualizing interaction networks of circular RNAs. The webpage of CircNetVis is currently located at https://www.meb.ki.se/shiny/truvu/CircNetVis/.
CircNetVis is built based on Rshiny running in linux environment. This GitHub page (https://github.com/nghiavtr/CircNetVis) contains the source codes and data of the web application.
Steps to run CircNetVis in a local computer:
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Install the following R packages: shinythemes, shiny, shinyjs, visNetwork, doParallel, DT, rjson, RSQLite, dbplyr, DBI, dplyr, data.table
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Download or clone CircNetVis from its GitHub: https://github.com/nghiavtr/CircNetVis
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Download CircNetVis_resources.tar.gz and CircNetVis_mm9_resources.tar.gz from the zenodo repository: https://doi.org/10.5281/zenodo.10394426
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Uncompressed CircNetVis_resources.tar.gz and copy all files to the CircNetVis folder
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Uncompressed CircNetVis_mm9_resources.tar.gz and copy all files to the CircNetVis_mm9 folder
Now the CircNetVis is ready to use locally in your computer.