ngcrawford

stable-diffusion

A latent text-to-image diffusion model

Stella

Repository for the electronic trumpet project

NuEVI

Electronic Valve Instrument – MIDI controller based on the Teensy 3.2

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

jupytext

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

math-as-code

a cheat-sheet for mathematical notation in code form

bokeh-app-uk-road-accidents-viz

An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.

dashboards_setup

[RETIRED] Recipes for setting up components related to the incubating dashboards effort

nbdime

Tools for diffing and merging of Jupyter notebooks.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

dask-ec2

Start a cluster in EC2 for dask.distributed

SimPhy

SimPhy: A comprehensive simulator of gene family evolution

msms

A coalsecent simulator with selection

phy-mer

phy-mer

pyxley

Python helpers for building dashboards using Flask and React

eqtlbma

Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.

pyneural

rodeo

A data science IDE for Python

ASTRAL

Accurate Species TRee ALgorithm

pylmm

A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.

tweelead

Generate actionable leads from Twitter

k-means-plus-plus-pandas

An implementation of the k-means++ clustering algorithm using Pandas

MITObim

MITObim - mitochondrial baiting and iterative mapping

python-naive-bayes

Naive Bayes in Python

skll

SciKit-Learn Laboratory (SKLL) makes it easy to run machine learning experiments.

genomicspapers

The Leek group guide to genomics papers

WASP

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

uno

Uno - a minimal, responsive theme for Ghost

Gooey

Turn (almost) any Python command line program into a full GUI application with one line