nf-core / pixelator

Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

https://nf-co.re/pixelator

nf-core/pixelator Issues

New nextflow_schema.json validation issues with nf-validation
Closed 5 months ago
Revamp modules/local/rename_reads.nf
Closed 7 months ago
Finalise test data setup
Closed 9 months ago4
Update once Bioconda recipe is live
Closed 9 months ago
First speed pass
Closed 10 months ago10
Mac support for `nf-core-pixelator`
Closed 2 years ago2
Prepare for public release of `nf-core-pixelator`
Closed 2 years ago2
Configure GitHub Machine user account
Closed 2 years ago
Setup internal AWS Batch infrastructure
Closed 2 years ago3
Nf-core pixelator prototype
Closed 2 years ago
Configure CI
Closed 2 years ago
Replace/hide all the Github related stuff
Closed 2 years ago
Create module for report command
Closed 2 years ago
Create module for cluster command
Closed 2 years ago
Create module for collapse command
Closed 2 years ago
Create module for demux command
Closed 2 years ago
Create module for adapterqc command
Closed 2 years ago
Create module for preqc command
Closed 2 years ago
Create module for concatenate command
Closed 2 years ago
Update nf-core skelton
Closed 2 years ago
Create a repository to store test files and stuff (mimicking what nf-core has for modules)
Closed 2 years ago
Investigate ways to fetch the barcodes files from pixelator
Closed 2 years ago
Investigate ways to fetch the design file from pixelator
Closed 2 years ago
initial template build from nf-core/tools, version 2.2 - [merged]
Closed 2 years ago3