update cooltools compartments
nservant opened this issue · comments
Nicolas Servant commented
Remove those steps from the compartment calling
- cooltools genome binnify --all-names ${chrsize} ${resolution} > genome_bins.txt
- cooltools genome gc genome_bins.txt ${fasta} > genome_gc.txt
Nicolas Servant commented
Add some test dataset
https://github.com/open2c/cooltools/tree/master/tests