nf-core / hic

Analysis of Chromosome Conformation Capture data (Hi-C)

Home Page:https://nf-co.re/hic

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update cooltools compartments

nservant opened this issue · comments

Remove those steps from the compartment calling

  • cooltools genome binnify --all-names ${chrsize} ${resolution} > genome_bins.txt
  • cooltools genome gc genome_bins.txt ${fasta} > genome_gc.txt