[dev] ./genome/genome.fa link not created in output dir
darked89 opened this issue · comments
Hello,
I have run:
nextflow run . -profile test,singularity --outdir ../out_test_nf_chipseq
While loading IGV session session:
cd ../out_test_nf_chipseq/igv/broadPeak/
igv.sh
#Loading:
igv_session.xml
IGV reported:
Error loading session session: Cannot locate genome: /full/path/to/out_test_nf_chipseq/genome/genome.fa
I have found ( in one of the subdir in ./work) and soft-linked the genome.fa to out_test_nf_chipseq/genome/genome.fa
after which IGV displayed the results as expected.
This is a fairly minor nuisance, but IMHO it should be addressed.
Many thanks for creating and maintaining such complex pipeline.
Darek Kedra
Thanks for reporting @darked89, we should address it before releasing 2.0!