darked89

gwas2vcf

Convert GWAS summary statistics to VCF

utils_2019

scripts, slurm, singularity

affinityprop

Vectorized and Parallelized Affinity Propagation

airflow_tutorial

ansible-role-irods-srv

Repository for ansible role installing and configuring irods (catalogue or resource) servers

bio-panpipe

Bio-PanPipe package for detection of germline and somatic variants

cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

darked89.github.io

Serif is a beautiful small business theme for Jekyll.

geneidc

Predict splice sites, exons or genes, in eukaryotic genomic DNA sequences

geneidt

geneid trainer refactor

doc-ANNOVAR

Documentation for the ANNOVAR software

FREEC

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

gene2farm

Gene2Farm Winter School 2013

github-pages-with-jekyll

test site a

leszek_scripts

My bioinfo toolbox

MOP2

Master of Pores 2

MUSIC

MUltiScale enrIchment Calling for ChIP-Seq Datasets

needlestack

Multi-sample somatic variant caller

netzcore

Analysis for Guney & Oliva, 2012 & 2014 articles

nexus_perl_scripts

A collection of perl scripts. Mostly used for parsing array-cgh data

panpipe

PanPipe Workflow Manager

PennCNV

Copy number vaiation detection from SNP arrays

r-pkgs

Building R packages

SICER2

Implement few fixes for SICER2

test_darked89.github.io

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

test_web

training-kit

Open source cheat sheets for Git and GitHub

tRNA_methyl

map and analyse methylated tRNAs using NGS data