Jeff Neyhart's repositories
finding_berries
PyTorch implementation of the paper "Finding Berries: Segmentation and Counting of Cranberries using Point Supervision and Shape Priors". Peri Akiva, Kristin Dana, Peter Oudemans, Michael Mars. CVPRW2020.
wcsm-usask
University of Saskatchewan Winter Cereal Survival Model
fbutils
Functions to analyze experimental data from the Android Field Book App
umn_thesis
A bookdown template for compiling a thesis in R Markdown for the University of Minnesota
Heritability
Heritability in plant breeding
grass.leaf_rust.detection_2.26.19
Demo showcasing crown and stem rust detection on perennial ryegrass leaves
pbsimData
Data to support simulations using the pbsim package
barleypheno
An R package to run phenotypic data processing, optimized for the UMN Barley Breeding Group
svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
UCDPSS_2017_Slides
Slides for a presentation at the UC Davis Plant Sciences Symposium
fsimpute
An R package for imputing data from genotyping-by-sequencing experiments in bi-parental populations of finite generations of selfing
RandomGenome
Randomly generates titles for genome sequencing papers
Field-Book
Field Book
FieldTrial-Excel
Function to create a formatted excel file based on a plot design function
Journals
Recent finds in journals covering genetics, genomics, and evolutionary biology.
sequence_handling
A series of scripts to automate sequence workflows