neyhartj / snps

An R package with utility functions for manipulating SNP marker data.

snps

The snps package contains helper functions for manipulating marker genotypes stored in a numeric matrix. Functions are provided for calculating minor allele frequency, filtering SNPs, pruning SNPs in high linkage disequilibrium, etc.

This package is not very complete, thorough, or extensive. It is simply a code organization tool.

Installation

You can install the package using devtools::install_github():

if (!require(devtools)) install.packages("devtools")
devtools::install_github("neyhartj/snps")