Giters
Jon Palmer (nextgenusfs)

nextgenusfs

Geek Repo

95

followers

2

following

20

stars

Location:Palo Alto, CA

Github PK Tool:Github PK Tool

Jon Palmer's starred repositories

RAFT

Language:C++Stargazers:17Issues:0Issues:0

funannotate2

Eukaryotic genome annotation software.

Language:PythonLicense:BSD-2-ClauseStargazers:3Issues:0Issues:0

skyplane

🔥 Blazing fast bulk data transfers between any cloud 🔥

Language:PythonLicense:Apache-2.0Stargazers:991Issues:0Issues:0

gfftk

GFF toolkit

Language:PythonLicense:BSD-2-ClauseStargazers:5Issues:0Issues:0

bigtree

Tree Implementation and Methods for Python, integrated with list, dictionary, pandas and polars DataFrame.

Language:PythonLicense:MITStargazers:134Issues:0Issues:0

gapmm2

gapmm2: gapped alignment using minimap2 (align transcripts to genome)

Language:PythonLicense:BSD-2-ClauseStargazers:3Issues:0Issues:0

buscolite

BUSCOlite: simplified conserved marker gene prediction for genome annotation

Language:PythonLicense:BSD-2-ClauseStargazers:3Issues:0Issues:0

amptk

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

Language:PythonLicense:BSD-2-ClauseStargazers:35Issues:0Issues:0

gb-io.py

A Python interface to gb-io, a fast GenBank parser written in Rust.

Language:PythonLicense:MITStargazers:12Issues:0Issues:0

gpn

Genomic Pre-trained Network

Language:Jupyter NotebookLicense:MITStargazers:173Issues:0Issues:0

SHOOT

SHOOT.bio - the phylogenetic search engine

Language:PythonLicense:GPL-3.0Stargazers:25Issues:0Issues:0

METABOLIC

A scalable high-throughput metabolic and biogeochemical functional trait profiler

Language:PerlStargazers:165Issues:0Issues:0

metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Language:CLicense:GPL-3.0Stargazers:173Issues:0Issues:0

BAMscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

Language:CLicense:NOASSERTIONStargazers:65Issues:0Issues:0

bioseq-js

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

Language:HTMLLicense:NOASSERTIONStargazers:37Issues:0Issues:0

funannotate

Eukaryotic Genome Annotation Pipeline

Language:PythonLicense:BSD-2-ClauseStargazers:312Issues:0Issues:0

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Language:C++License:MITStargazers:495Issues:0Issues:0

satsuma2

FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing

Language:C++Stargazers:39Issues:0Issues:0

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

Language:RLicense:LGPL-3.0Stargazers:459Issues:0Issues:0

ont-assembly-polish

ONT assembly and Illumina polishing pipeline

Language:MakefileLicense:MPL-2.0Stargazers:90Issues:0Issues:0