NewAtlantis Labs's repositories
Living-Oceans
🌊 Robust workflows for gathering data about your local ocean.
Metagenomics
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
veba-stable
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes. Built by @Jolespin, stable maintenance and containerization from NewAtlantis
pykofamsearch-stable
Fast implementation of KofamScan optimized for high-memory systems using PyHmmer
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DiffDock_GPU_Stable
Dockerized Version of the DiffDock model from MIT, Stable Release Maintained through NewAtlantis
presentations
Materials notebooks for presentation/communications
nal-notebook-templates
a collection of notebook templates that are reflected on the cloud lab
pyhmmsearch-stable
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer