neurogenomics

hierarchicell

An R package for simulating cell-type specific and hierarchical single-cell expression data

MAGMA_Files_Public

Publicly shared SNP-to-gene mappings of GWAS generated by MAGMA.

document_and_share

Strategies for documentation and sharing of data analyses.

scFlowExamples

EpiPrepare

Preprocessing of epigenomic data from fastq files.

EWCE

rare_disease_celltyping_apps

All apps and homepage code in one place for the rare disease EWCE project.

10X_multiome_anlysis

Simple straightforward overview for 10X multiome (GEX+ATAC) analysis

Benchmark_with_EpiCompare

ENCODE reproducibility check, cutandrun & TIP-seq benchmark

bioc-actions

GitHub Actions for developing and maintaining Bioconductor packages

BiocStyle

Issues and pull requests for BiocStyle should go here.

cFos_integrative_analysis

CHiCAGO_for-Radicl-seq

RADICL-seq data tag distance plot

cranlogs

Download Logs from the RStudio CRAN Mirror

CUT_n_TAG

Preprocessing pipeline for CUT&TAG data.

CUTnTag-benchmarking-analysis

Processing, benchmarking and analysis of CUT&Tag against ENCODE ChIP-seq.

dockerfiles

docker files for dockerhub

EpiArchives

Public archive for EpiCompare reports.

ldsc_wdl_workflow

MAP_analyses

MyBioconductorPackage

What the Package Does (One Line, Title Case)

nf-imperial-canary

nf-core config checks for the Imperial HPC

PRISMA2020

rtracklayer

R interface to genome annotation files and the UCSC genome browser

scflow-1

Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

scflowpy

Python helper package for scFlow

scNLP

Tools for applying natural language processing (NLP) techniques to single-cell (sc) omics data.

SkillNet

Construct and search networks from skill sets and projects for all lab members.

VariantAnnotation

Annotation of Genetic Variants

wdl-scflow

WDL pipelining for scflow