neurogenomics / MSTExplorer

Multi-Scale Target Explorer systematically identifies, prioritises, and visualises cell-type-specific gene therapy targets across the phenome.

https://neurogenomics.github.io/MSTExplorer/

neurogenomics/MSTExplorer Issues

`The magick package is required to crop`
Closed 9 months ago
Determining the appropriate background
Closed 9 months ago4
MultiEWCE v0.1.8: Fix unit tests
Closed 9 months ago1
onto_plot from the ontologyPlot package does not include "Abnormality of" in the phenotype labels on plots
Closed a year ago
Fix CTD
Closed a year ago7
Filter by symptom gene overlap
Closed a year ago1
`prioritise_targets`: Filter phenotypes associated with >N diseases
Closed a year ago
Parallelising in R efficiently
Closed a year ago4
Filter by symptom pvalues
Closed a year ago1
`priortise_targets`: track how many phenotypes/celltypes/genes dropped at each step
Closed a year ago8
Increase resolution of saved `visNetwork` plots
Closed a year ago1
ggnetwork_plot_full: `Error in cbind(x, y, others) : object 'x' not found`
Closed 2 years ago6
`prioritise_targets`: ensure Tier filtering is comprehensive
Closed a year ago4
Create a function which makes a plot showing number of cell types associated with phenotypes that are descendants of a particular HPO term
Closed 2 years ago1
`prioritise_targets_network`: automatically remove non-applicable variables from hoverdata
Updated 9 months ago
`prioritise_targets_network`: Add links to HPO pages in hoverdata
Updated 9 months ago