McGill University

McGill University's repositories

AutomatedCiliaMeasurements

Pipeline to measure cilia, nuclei, and centrioles and which cilia are close to which nuclei and centrioles using CellProfiler and Python

Language:Python000

Auto-qPCR

A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.

Language:PythonNOASSERTION3700

MidbrainOrganoid_scRNAseq

R scripts for filtering, integrating, clustering, annotating and looking at gene expression within clusters from two samples of three midbrain organoids

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CellQ

Image J python /jython macro to analyze 2D cell cultures counting cell density and positive cells for markers of interest

Language:Python100

OrgM

A Fiji macro for measuring organoid area and size

Language:Python400

HistQ

A Fiji (ImageJ) macro written in jython for automated batch analysis of histology sections.

Language:Python100

OrgQ

analysis 4 channels IF of histology sections of organoids used in Mohammed et al

Language:Python100