Neuroanatomy

BrainBox

BrainBox is a web application that lets you annotate and segment 3D brain imaging data in real time, collaboratively.

microdraw

Collaborative vectorial annotation tool for ultra high resolution data

reorient

A tool for reorienting and cropping MRI data

autism-challenge

Data Challenge on Autism Spectrum Disorder detection

GWPC

Grey-to-White matter Percent Contrast in Autism Spectrum Disorders

histology-db

Building an online database for storing, curating and sharing metadata and data from diverse collections of histological data.

NeuroWebLab

NeuroWebLab backend

thresholdmann

A tool to apply a smoothly varying threshold to a nifti image

meshgeometry

mesh geometry tools

comp-cb-folding

Diversity and evolution of cerebellar folding in mammals

marching_cubes

A marching cubes implementation, using libigl

microdraw-tutorials

Tutorial for working with open histological data using MicroDraw.

brain-covid

braincov

BrainCov project

braindev-challenge

Data Challenge on neurodevelopmental disorders detection

brainspell2

search engine and collaborative annotation tool for neuroimaging data

challenge-engine

A GitHub based engine to run data challenges with distributed computing and scoring.

cmapjs

Web-based Coactivation Map browser

cogbases-2023

Website for the CogBases workshop - Institut Pasteur, Octobre 2023

eslint-config-naat

Style rules for js code at NAAT

MeMoDEvo

Mechanics, morphogenesis, development & evolution. QBio Symposium 2022

microdraw.py

Python package for quantitative histology analyses with MicroDraw

neuroimaging-zombies-ohbm-2024

Utilities for neuroimaging zombies project at OHBM 2024 Hackathon

NeuroWebLab-app

NeuroWebLab-server

nwl-components

Vue components for the Neuroweblab frontend

pli-get

posterwall

Code for creating deep zoom poster walls

trainable_segmentation

A trainable segmentation interface for MicroDraw.

translucent-viewer

A translucent viewer for neuroimaging clusters