NeuroML

resnet_cnn_mri_adni

Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper

deep_pipe

A collection of tools for deep learning experiments

amid

Awesome Medical Imaging Datasets

reskit

A library for creating and curating reproducible pipelines for scientific and industrial machine learning

inverse_weighting

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MICCAI 2020, oral).

imops

Efficient parallelizable algorithms for multidimensional arrays to speed up your data pipelines

domain_shift_anatomy

Code release for the paper I. Zakazov, B. Shirokikh et al. "Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation" (MICCAI 2021, oral).

connectome

A library for datasets containing heterogeneous data

midline-shift-detection

Full code for the paper "Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection"

straighten

Interpolation along multidimensional curves

thunder

🌩️ The Deep Learning framework based on Lightning

vertebral-fractures-severity

Repository for the paper "Keypoints Localization for Joint Vertebra Detection and Fracture Severity Quantification"

bev

Flexible version control for files and folders

dicom-csv

Utils for gathering, aggregation and handling metadata from DICOM files

COVID-19-Triage

connectome-tutorials

anchor-free-genant

BIDSTransformers

BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture

brats

BraTS competition

edr-gp

A library for sparse Effective (functional) Dimensionality Reduction via Gaussian Processes

low-resolution

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"

structural-connectome-validation-pairwise

Repository for paper 'Structural Connectome Validation Using Pairwise Classification'

tarn

An insanely customizable framework for key-value storage 💾

curve-detection

dpipe_mnist

A short deep_pipe example

dpipe_tutorial_notebooks

PRNI2016

pycharm-connectome-support

Connectome Support for PyCharm

scipy_proceedings

Tools used to generate the SciPy conference proceedings

static-yoga