NeuroML's repositories
resnet_cnn_mri_adni
Code for Residual and Plain Convolutional Neural Networks for 3D Brain MRI Classification paper
inverse_weighting
Code release for the paper B. Shirokikh, A. Shevtsov et al. "Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation" (MICCAI 2020, oral).
domain_shift_anatomy
Code release for the paper I. Zakazov, B. Shirokikh et al. "Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation" (MICCAI 2021, oral).
connectome
A library for datasets containing heterogeneous data
midline-shift-detection
Full code for the paper "Incorporating Task-Specific Structural Knowledge into CNNs for Brain Midline Shift Detection"
straighten
Interpolation along multidimensional curves
vertebral-fractures-severity
Repository for the paper "Keypoints Localization for Joint Vertebra Detection and Fracture Severity Quantification"
BIDSTransformers
BIDS Transformers for neuroimaging data preprocessing based on BIDS and sklearn architecture
low-resolution
Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"
structural-connectome-validation-pairwise
Repository for paper 'Structural Connectome Validation Using Pairwise Classification'
dpipe_mnist
A short deep_pipe example
pycharm-connectome-support
Connectome Support for PyCharm
scipy_proceedings
Tools used to generate the SciPy conference proceedings