nessa0389

dance

DANCE: a deep learning library and benchmark platform for single-cell analysis

p2rank

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

squidpy

Spatial Single Cell Analysis in Python

seurat

R toolkit for single cell genomics

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

graphein

Protein Graph Library

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

biopython

Official git repository for Biopython (originally converted from CVS)

CellHeapRelease

CellHeap

MCView

A shiny app for metacell analysis

scikit-learn

scikit-learn: machine learning in Python

CompChemToolBox

tricky problems, but smart solutions for Computational Chemistry

artie93

Config files for my GitHub profile.

metacell

Metacell - Single-cell mRNA Analysis