nellore / runs

Scripts for reproducing analyses of large RNA-seq datasets

Runs of Rail-RNA on large RNA-seq datasets

GTEx

See gtex/ for how to rerun GTEx alignment jobs on Amazon Elastic MapReduce and how to reproduce figures from the Rail-dbGaP paper.

SRA

See sra/ for how to rerun SRA alignment jobs on Amazon Elastic MapReduce and how to reproduce figures from the paper Human splicing diversity across the Sequence Read Archive.

TCGA

See tcga/ for how to rerun TCGA alignment jobs on Amazon Elastic MapReduce.

License

All software in this repository is licensed under the MIT license. See LICENSE in this directory for details.