Jacob T. Nearing's repositories
Denoiser-Comparison
Repository for scripts used for the Denosier Comparison Project
Nearing_et_al_2020_Oral_Microbiome
Contains all of the code used to analysis results presented in Nearing et al. 2020 "Assessing the variation within the oral microbiome of healthy adults"
ALL_Infection_and_the_Microbiome
Repo for R scripts used to analysis ALL data
microbiome_helper
An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
q2-vsearch
vsearch plugin for QIIME 2
Cambodia_Iron_Supplement
This repository contains all of the code for the in preperation manuscript:
DenoiseCompare
Comparison Project
differential-abundance-theory
A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.
Language:HTML000
Maaslin2
MaAsLin2: Microbiome Multivariate Association with Linear Models
Language:RNOASSERTION000
nearinj.github.io
Repository that holds my personal website written in rmarkdown
RandomForestUtils
RandomForestUtils R Package