Nelson Nazzicari's repositories
coding_excercises
A public repo for slides and exercise for the "Introduction to deep learning for biologists" Physalia course, by Nelson Nazzicari and Filippo Biscarini
bioinformateachers
Code archive linked to the bioinformatics-oriented educational website bioinformateachers.wordpress.com
dataviz_python
A repository supporting the Physalia course on data visualization in python
CREA-ZA_metabarcoding-grana
Metabarcoding analysis on Grana cheese, by CREA-ZA research group (Lodi, Italy)
CREA-ZA_Spallanzani_metabarcoding-grana-veg
Metabarcoding analysis on milk used to produce Grana Padano cheese
dDocent
a bash pipeline for RAD sequencing
deep-meta
Drug resistance prediction from metagenomics raw sequence data using deep learning
GBS-PreProcess
Scripts to pre-process Genotyping-by-Sequencing data (GBS) before analysis with STACKS.
legpipe2
SNP calling pipeline
parsimony
Parsimonious predictor for binary traits in sugar beet
pyGBS-PreProcess
Python reimplementation of existing repository GBS-PreProcess