Nishadi De Silva's repositories
Bio-Metadata-Validator
Validate a genome metadata manifest against a checklist
Bio-RNASeq
The new Sanger Pathogen Informatics RNA Seq analysis pipeline
Bio-Sequencescape-Schema
DBIC schema for the sequencescape warehouse database
eg-web-common
modules/files required to set up any of the EG genome browsers
eg-web-fungi
modules required to set up EG Fungi mirror
ensembl-analysis
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
ensembl-compara
The Ensembl Compara Perl API and SQL schema
ensembl-genomio
Pipelines to turn basic genomic data into Ensembl cores and back
ensembl-metadata
API for storing and querying metadata from Ensembl and EnsemblGenomes
ensembl-production
Ensembl Production code
ensembl-production-imported
Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)
ensembl-static-1
Stores all static contents for Non-vertebrates divisions and species.
mettannotator
METT annotation
public-plugins
Plugins for an Ensembl website
Roary
Rapid large-scale prokaryote pan genome analysis
sarscov2-annotation
Selection of code used to import SARS-CoV-2 related annotation into a BigBed file for loading into various genome browsers. This is based on efforts by the UCSC Genome Browser team
setup_tracking
setup a vrtracking pipeline