Nic Dobbins's repositories
AdvancingSeq2Seq
Repository for EMNLP 2020 Submission "Advancing Seq2Seq Semantic Parsing with Joint Paraphrase Learning"
DT-Fixup
Optimizing Deeper Transformers on Small Datasets https://arxiv.org/abs/2012.15355
dygiepp
Span-based system for named entity, relation, and event extraction.
embeddings
Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
GODEL
Large-scale pretrained models for goal-directed dialog
loinc2hpoAnnotation
loinc2hpo Annotation Data
medtype
MedType: Improving Medical Entity Linking with Semantic Type Prediction
metamaplite
A near real-time named-entity recognizer
NER-BiLSTM-CRF-PyTorch
PyTorch implementation of BiLSTM-CRF and Bi-LSTM-CNN-CRF models for named entity recognition.
PrimeKG
Precision Medicine Knowledge Graph (PrimeKG)
pytorch_lstmcrf
Pytorch implementation of LSTM-CRF for named entity recognition
react-text-annotate
React components for interactively highlighting parts of text.
t5-for-code-generation
Semantic Parsing with text-to-text Transformers
t5_finetune
A simple example for finetuning HuggingFace T5 model. Includes code for intermediate generation.
T5_nlg
Code for the medium blogpost "Data to Text generation with T5; Building a simple yet advanced NLG model"
text-to-text-transfer-transformer
Code for the paper "Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer"
transformers-ner
Experiment on NER task using Huggingface state-of-the-art Transformers Natural Language Models library
umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
US_zipcode_topojson_extractor
Creates TopoJSON files of all the zip codes in each state