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ncsa
/
NEAT
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Stargazers:
36
Watchers:
8
Issues:
61
Forks:
12
ncsa/NEAT Issues
Can't run read-simulator. Probably dependency problem
Updated
6 months ago
Comments count
19
Unable to run NEAT examples in the README
Updated
6 months ago
Comments count
9
Re evaluation of alignment bam files failed when calling with variant calling
Updated
7 months ago
Comments count
7
neat read-simulator takes very long
Updated
8 months ago
Comments count
3
Easy way to specify not to simulate indels in the mutation model?
Updated
8 months ago
Comments count
5
Installation failure due to version conflicts
Closed
8 months ago
Comments count
5
Multi-threading NEAT
Updated
10 months ago
Comments count
5
Skipped variants in VCF file
Closed
a year ago
Comments count
12
Add support for multi-allelic variants within input VCF
Closed
a year ago
Comments count
6
Update package versions
Closed
a year ago
Fasta-only mode
Closed
a year ago
Refactor main code
Closed
a year ago
Overhaul probabilities
Closed
a year ago
sequencing error rate scale
Closed
a year ago
Comments count
2
FP SNPs in "golden" vcf?
Updated
a year ago
Comments count
5
Problem with vcf_compare_OLD.py
Closed
a year ago
Comments count
6
Error when sampling reads
Closed
a year ago
Comments count
1
Missing information from "golden" vcf output
Updated
a year ago
Comments count
3
IndexError: list index out of range
Closed
a year ago
Comments count
1
Quality scores not mimicking real data
Updated
a year ago
Comments count
13
Inserting New variants using VCF file not inserting the SNP/INDELS
Closed
a year ago
Comments count
4
Insertion of CNVs
Updated
a year ago
Comments count
4
Specification of variant allele frequency for inserted mutation ?
Updated
2 years ago
Comments count
2
Coverage not working as intended
Updated
2 years ago
Comments count
2
Incorporate pybedtools into compute_gc + improvements
Updated
2 years ago
Unable to simulate HOM (1/1) variants? Reads/VCF only show HET (0/1)
Closed
2 years ago
Comments count
5
IndexError when generating artificial tumor reads
Updated
2 years ago
Comments count
4
MutableSeq Object error
Closed
2 years ago
Comments count
6
Number of variants generated from mutational model lower than expected
Updated
2 years ago
Comments count
3
Potential Bug in compute_fraglen.py - Incorrect fraglength distribution
Closed
2 years ago
Comments count
2
WES Style Data - Variant Inserts Missing with `-v` option on.
Closed
2 years ago
Comments count
15
Error with utilities/vcf_compare_OLD.py
Closed
2 years ago
Comments count
2
Running on ChrM only
Closed
2 years ago
Comments count
6
Pickle error
Closed
2 years ago
Comments count
3
Provide the algorithm used to create BAM files
Closed
2 years ago
Comments count
2
KeyError: 'AVG_MUT_RATE' when specifying mutModel
Closed
2 years ago
Comments count
2
Number of sites in VCF does not correspond to -M setting?
Closed
2 years ago
Comments count
18
Error simulating reads using input VCF for human Y chromosome
Closed
2 years ago
Comments count
6
Ceci n'est pas une bogue
Closed
3 years ago
Test Ticket
Closed
3 years ago
Comments count
1
Inconsistent coverage with high depth (> 20,000X)
Closed
3 years ago
Comments count
1
Incorporating utilities into NEAT in a streamlined way
Updated
3 years ago
Utilizing AI to model exsting data
Updated
3 years ago
Bypass Bam Functionality when not Needed
Updated
3 years ago
Comments count
2
Parallel simulations
Closed
3 years ago
Comments count
2
Paired-end reads have identical sequence
Closed
3 years ago
Comments count
4
test
Closed
3 years ago
setup.py not updated
Closed
3 years ago
Comments count
1
Copy number variations input
Updated
3 years ago
Comments count
2
Testing
Closed
3 years ago
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