ncoudray / DeepPATH

Classification of Lung cancer slide images using deep-learning

ncoudray/DeepPATH Issues

Issue running bazel
Updated 6 months ago
JSON file
Updated 6 months ago2
normalize tile
Closed 6 months ago1
Reference image for Vahadane normalization
Closed 6 months ago2
Multiple Instance Learning
Updated a year ago1
Color classification problem in 3-Analyze the outcome
Closed a year ago7
Questions about cv2.findContours()
Closed 2 years ago1
Use 0f_ HeatMap_ nClasses_ Overall.py has no result output
Closed 2 years ago
How can I use my data to build my json file?
Closed 2 years ago
In Pytorch
Updated 2 years ago
Multi-label mutation data splits
Updated 2 years ago
How to specify certain slides in a split
Closed 2 years ago2
How to compute the loss
Updated 2 years ago1
Mutation Prediction Data duplication
Closed 2 years ago1
stuck at 0b_tileLoop_deepzoom6.py when tiles a very large tiff image.
Updated 2 years ago2
Which exact WSIs are selected for EGFR prediction?
Updated 2 years ago4
train/test/folder image structure for fine-tuning via Inception V3 for mutation classification
Closed 2 years ago1
Exact way of doing tile aggregation by averaging output probability
Updated 2 years ago1
Clarification about Labels
Closed 2 years ago2
mrxs images
Closed 2 years ago1
About Transfer Learning - Frozen weights?
Updated 2 years ago
Issue about Gene mutation prodiction
Closed 2 years ago2
JSON files?
Closed 2 years ago6
Data
Closed 2 years ago7
Downsampling for low magnification tiles
Closed 2 years ago1
Datasplits
Closed 3 years ago3
Aperio ImageScope xml problem
Closed 3 years ago14
Get_Labstats_From_jpeg.py not in the repository
Closed 3 years ago
Data augmentation
Updated 3 years ago1
About retrieve mutation information: "the barecode can be used to match images to sample."
Closed 3 years ago2
model.ckpt-81500.data-00000-of-00001
Closed 3 years ago9
Choosing reference image for Vahadane normalization
Closed 3 years ago2
A question about the dataset
Closed 3 years ago1
Hi,I found the LUAD and LUSC whole-slide images,I don’t know how to search the whole-slide images of normal lungs from the TCGA, could you tell me how to get it?Thanks.
Closed 3 years ago
Hi:The data set link you provided shows that it cannot be accessed. Could you provide a link again?Thank you very much! Looking forward to hearing from you!
Closed 4 years ago4
Model checkpoints missing data file
Closed 4 years ago10
Number of LUAD, LUSC and Normal images
Closed 4 years ago3
Testing the model produces different results without changing data for classes
Closed 4 years ago2
About model saved
Closed 4 years ago
Issues understanding the trained model predictions
Closed 4 years ago1
Freezing the auxillary classifier
Updated 4 years ago
Training the dataset using Folder name as image Labels
Closed 4 years ago1
missing checkpoint data file
Closed 4 years ago1
How do I evaluate a single TFRecord to determine the most likely label?
Closed 4 years ago6
UnboundLocalError: local variable 'HeatMap_divider' referenced before assignment
Closed 4 years ago3
Tiling - can result in high FP?
Closed 4 years ago1
Use 0b_tileLoop_deepzoom4.py to only get tile coordinates
Closed 4 years ago1
Typo on example_TCGA_lung/checkpoints/README.md
Closed 4 years ago1
How to get the ROC curve
Closed 5 years ago2
Checkpoint Data Missing
Closed 5 years ago2