NCI Human Tumor Atlas Network (HTAN)

data-models

Schema.org Data Models for HTAN

htan-portal

The HTAN Data Portal

htan-webassets

dsa-htan

Analytics and Integration Scripts for Digital Slide Integration with Synapse for the Human Tumor Atlas Network (HTAN)

HTAN-data-curator

HTAN Data Ingest Shiny App

IDP

s3batch-phi-detector

schematic

Package for biomedical data model and data ingress management

hsim

Command line tool for generating simulated HTAN metadata for the HTAN Data Portal.

htan-vitessce-proto

An example configuration based off 10x visium tutorial

mcmicro

Multiple-choice microscopy pipeline

scn2ometiff

Community-Notebooks

Community-Notebooks fork for building HTAN BigQuery Notebooks

gcs-synapse-sync

Google Cloud Function code to index files in GC bucket by creating filehandles on Synapse, triggered by changes to bucket.

hdash

Command line tool for generating HTAN dashboard.

hdash_air

htan-artist

A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.

HTAN-Data-Ingress-Docs

A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.

htan-orator

Scripts to describe HTAN data in natural language

htan_missing_manual

HTAN - The Missing Manual

htancensor

A tool to de-identify tiff-based file formats for the HTAN DCC

image-header-validation

Matching manifest metadata to those in image headers

metadata-explorer

s3-synapse-sync

Lambda function code to index files in S3 bucket by creating filehandles on Synapse

scripts