Nicola Casiraghi's repositories
whatshap_phasing
phasing genomic variants using WhatsHap on Illumina WGS and Nanopore data
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abemus_raw_code
Detection of somatic SNVs in cfDNA
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freebayes_snakemake
snakemake workflow for Freebayes
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gatk_haplotypecaller
snakemake workflow for GATK HaplotypeCaller
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infercnv_hipo
apply inferCNV on multiple myeloma samples (DKFZ HIPO project)
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infercnv_MB
Set inputs and apply inferCNV on Medulloblastoma samples
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preprocessing_data_Gandellini
pre-process Haloplex WES PE Illumina data
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sc10x_dna_code
Analysis of single cell data from 10x CNV assay
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scrna_vs_scdna
Integration of scRNA-seq and scDNA-seq data from 10x assays
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