Nicola Casiraghi's repositories
whatshap_phasing
phasing genomic variants using WhatsHap on Illumina WGS and Nanopore data
abemus_raw_code
Detection of somatic SNVs in cfDNA
Language:R000
freebayes_snakemake
snakemake workflow for Freebayes
Language:R000
gatk_haplotypecaller
snakemake workflow for GATK HaplotypeCaller
infercnv_hipo
apply inferCNV on multiple myeloma samples (DKFZ HIPO project)
Language:R000
infercnv_MB
Set inputs and apply inferCNV on Medulloblastoma samples
Language:R000
preprocessing_data_Gandellini
pre-process Haloplex WES PE Illumina data
Language:R000
sc10x_dna_code
Analysis of single cell data from 10x CNV assay
scrna_vs_scdna
Integration of scRNA-seq and scDNA-seq data from 10x assays
Language:R000