Nicola Casiraghi (ncasiraghi)

ncasiraghi

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Location:Trento, Italy

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Nicola Casiraghi's repositories

whatshap_phasing

phasing genomic variants using WhatsHap on Illumina WGS and Nanopore data

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abemus_raw_code

Detection of somatic SNVs in cfDNA

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freebayes_snakemake

snakemake workflow for Freebayes

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gatk_haplotypecaller

snakemake workflow for GATK HaplotypeCaller

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infercnv_hipo

apply inferCNV on multiple myeloma samples (DKFZ HIPO project)

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infercnv_MB

Set inputs and apply inferCNV on Medulloblastoma samples

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preprocessing_data_Gandellini

pre-process Haloplex WES PE Illumina data

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sc10x_dna_code

Analysis of single cell data from 10x CNV assay

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scrna_vs_scdna

Integration of scRNA-seq and scDNA-seq data from 10x assays

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