nbay13 / biorunr

An R package for running bioinformatic analyses including differential expression, geneset enrichment, and data visualization

biorunR

An R package for running bioinformatic analyses. Includes wrapper functions for performing differential expression (DESeq2), geneset enrichment (GSEA, GSVA/ssGSEA, topGO), and data visualization (ggplot2).

Dependencies

• classInt
• DESeq2 (& ashr)
• dplyr
• fgsea
• ggplot2
• GSVA
• Hmisc
• magrittr
• msigdbr
• org.Hs.eg.db
• RColorBrewer
• tibble
• topGO

Installation

if(!require("devtools", quietly = TRUE))
    install.packages("devtools")

devtools::install_github("nbay13/biorunr")

Usage

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