nbafrank

curatedTCGAData

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

TCGAutils

Toolbox package for organizing and working with TCGA data

PaCMAP

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

STdeconvolve

Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

GrantGPT

LLM-powered RFP generator that accelerates your grant application process securely, with higher success rate as the model learns from hundreds of previous successful applications (fully anonymized). | For more information, visit: chatgpt.org.

axolotl

Go ahead and axolotl questions

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

zero-shot-scfoundation

django

The Web framework for perfectionists with deadlines.

grok-1

Grok open release

ggflow

Makes plotting flow cytometry data easy and pretty. This package reads flowFrame objects and plots them in beautiful scatter plots using ggplot2. You can also select/gate cells/events on a plot to remove/select relevant cells and you can display a visible, rectangular gate with percentage of selected cells highlighted.

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Renv

Simple R version management, based on rbenv

SAW

zero_to_gpt

Go from no deep learning knowledge to implementing GPT.

shrimPy

shrimPy: Smart High-throughput Robust Imaging & Measurement in Python

exprsex

R package for sex labeling expression data

aroma.affymetrix

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

urmap

URMAP ultra-fast read mapper

10kimmunomes_v2

An interactive reference database for immunologists

hmmTMB

Fit hidden Markov models using Template Model Builder (TMB): flexible state-dependent distributions, transition probability structures, random effects, and smoothing splines.

RHmm

Hidden Markov Models simulations and estimations

mixtools

Tools for Analyzing Finite Mixture Models

llama2.c

Inference Llama 2 in one file of pure C

xorbits

Scalable Python DS & ML, in an API compatible & lightning fast way.

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

fastai

The fastai deep learning library

paper-qa

LLM Chain for answering questions from documents with citations

nanoGPT

The simplest, fastest repository for training/finetuning medium-sized GPTs.