Extend fc_neuron_type function

Question

Extend fc_neuron_type function

mmc46 opened this issue 7 years ago · comments

Marta Costa commented 7 years ago

Could this function look up both annotation_class "NeuronType" (currently) and "ALGlomerulus"?

Gregory Jefferis · Answer 1 · Sat Jan 21 2017 03:10:05 GMT+0800 (China Standard Time)

There's an fc_glom function. Does that do what you want?

If you want to join the two up:

pngloms=fc_glom()
paste(fc_neuron_type(names(pngloms)), pngloms)

Marta Costa · Answer 2 · Sat Jan 21 2017 03:14:53 GMT+0800 (China Standard Time)

fc_glom takes the neuron to return the glomerulus. I’d like to retrieve the neuron by searching with the glom. I don’t think that’s possible at the moment.

…

On 20 Jan 2017, at 19:10, Gregory Jefferis ***@***.***> wrote: There's an fc_glom function. Does that do what you want? If you want to join the two up: `` pngloms=fc_glom() paste(fc_neuron_type(names(pngloms)), pngloms) — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#41 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AByQ09FtgBsn-3F27BTt4h-psOpZ4C96ks5rUQaNgaJpZM4Lpklf>.

Gregory Jefferis · Answer 3 · Sat Jan 21 2017 03:48:40 GMT+0800 (China Standard Time)

There is a helper function mentioned in the fc_neuron_type docs that could help.

fc_annotated_class("ALGlomerulus", regex='DM1')

Marta Costa · Answer 4 · Tue Jan 24 2017 00:24:30 GMT+0800 (China Standard Time)

Yes, that works. Thanks.