Nathalia Graf-Grachet's repositories
docker_xcms
Docker container based on Rocker RStudio verse for CyVerse VICE
make_hpc_jobs
Collection of python scripts to generate jobs in the HPC. I used argparse and Gooey, and tested using pytest.
oak_metabolomics
Collection of scripts for the oak metabolic profiling paper.
fusarium_wilt_lettuce_di
MetaboDirect pipeline/notebooks for Fusarium wilt of Lettuce project.
my_carpentries_workshops
Collection of my resources/materials (code, notes, etc.) for The Carpentries workshops I taught
tdi_capstone
My AgricultureVision Capstone Project
wrapper_for_corems
Wrapper for CoreMS
awesome-agriculture
Open source technology for agriculture, farming, and gardening
CoreMS
CoreMS is a comprehensive mass spectrometry framework for software development and data analysis of small molecules
foss-2019
FOSS website
FunGAP
FunGAP: fungal Genome Annotation Pipeline
lambda
Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling
marinacria
I made this website for my sister using Hugo themes. My sister makes handmade personalized art pieces in watercolor and lettering.
ml-pen-and-paper-exercises
Pen and paper exercises in machine learning
my_rosalind_answers
My answers for Rosalind challenges
nathaliagg
My personal profile (:
ophio_circos
Circos plot with ribbon links, mtDNA Ophiosphaerella-P.nodorum
projects
My collection of Python and R projects. I include tutorials and full projects in this repo.
scraping_usda_oak_hybridization
Scraping USDA Plants database to extract information about oak species hybridization
Sherman
A simple Bisulfite FastQ Read Simulator (BiQRS)
sphagnum_tandemms
A brief tutorial on LCMS-MS data analysis
ten_great_papers
Ten great papers for wet lab biologists starting out in computational biology
WSHPackage
R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL