Nate Olson's repositories
adotto-smk
A snakemake based pipeline to build Adotto TR databases
giab-ont-ul-pipeline
Snakemake pipeline for processing ultra-long ONT datasets.
giab-data-readmes
repo for collaborative drafting and tracking READMEs for GIAB project
giab-shiny-portal
a shiny app based data portal for querying metadata for publicly available GIAB data.
tr-qc-tool
bioinformatic qc tool for evaluating repeat annotations
bioconda-recipes
Conda recipes for the bioconda channel.
cloud9-cdk-stack
cdk code to deploy a cloud9 environment
defrabb
Development Environment For Assembly Based Benchmarks
giab-data-portal-v0.1
Data tables and scripts for initial (spreadsheet) version of the GIAB data portal.
giab-HiFi-somatic-WDL
Tumor-normal variant calling workflow using HiFi reads - modification for other references
giab-med-genes-benchmark-ashg2020
Supplemental information for Wagner et al. 2020 ASHG poster.
giabShinyPortal
GIAB Sirius Portal
hap.py
Haplotype VCF comparison tools
HiFi-human-WGS-WDL-GIAB
Modification of pipeline for GIAB data processing
mosaic-benchmark-exploratory-analysis
Initial analysis characterizing low frequency variants in GIAB HG002.
RGTM10169
Information for RGTM 10169 (SARS-CoV-2 Synthetic RNA)
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
truvari
Structural variant toolkit for VCFs