naotohori

vmd-scripts

VMD scripts

life-of-py

Watch out! Richard Parker is there. (These are all just for my personal use.)

TIS2AA

Construct atomistic (AA) model from Three-Interaction-Site (TIS) coarse-grained model of RNA/DNA

pca_imkl

Principal Component Analysis (PCA) using Intel Math Kernel Library

16S-central-folding

9fc

Fortranコンパイラを作ってみたい。

Arena

AzoKinetics

fQCP

Fortran code of Quaternion Characteristic Polynomial (QCP) superposition method

BlendSciVis

Illustrate

Biomolecular Illustration Tool

lakers

lifeofpy

LinearFold

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

Matisse

NAclub

naotohori

Config files for my GitHub profile.

naotohori.github.io

notes

POPS

POPS*: solvent accessible surface areas (SASAs) of proteins and nucleic acids

process-book

Unix系システムのプロセスについて日本語で解説しています

proteincollapsvis

Dynamic visualization of the collapsibility of proteins in PDB. See http://dx.doi.org/10.1039/C7SM00074J

RNA_llps

code to perform coarse-grained simulations of RNA liquid-liquid phase separation

rnp32isgpu

SOP-GPU

Software package for simulations of biomolecules on GPU.

toml-f

TOML parser implementation for data serialization and deserialization in Fortran