nanoporetech / tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

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Cannot install on Mac OS

edimmick opened this issue · comments

I am pretty new to Python, so I apologise if this is a very obvious fix. I have tried installing with conda and pip, but neither works for me.

With conda I get this error:
Retrieving notices: ...working... done
Collecting package metadata (current_repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: unsuccessful initial attempt using frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  • ont-tombo

Current channels:

With pip I have this error:
ERROR: Failed building wheel for parasail
Running setup.py clean for parasail
Failed to build parasail
ERROR: Could not build wheels for parasail, which is required to install pyproject.toml-based projects

This looks like an issue installing parasail. I would look for potential solutions on the parasail package.

I would also recommend moving to Remora as Tombo is deprecated and no longer supported.