Slow Re-squiggle though set --process 40 to run tombo resquiggle over multiple cores
jouhpf opened this issue · comments
Dear developers, I have used tombo resquiggle without a command --processes，the expect process time is 24hours. Then , I used --processes 40 and --processes 50 to to run tombo resquiggle over multiple cores, but the expect process time did not get shorter(remain 24hours).
I want to speed up process by use this command, but it seems not work. I want to konw why the command don't work and want to ask you are there any method to speed up the resquiggle time?
(My device: Intel core E5 128Cores 256 threads, and the data is about four million)
I've got the same issue, if you are able to solve this problem, plz let me know, thank you.
Tombo is deprecated. I would highly recommend moving your pipeline to the Remora signal analysis API.
@marcus1487 thank you for your replay！I will try to use Remora next