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nanoporetech / tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

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Raising an error and exit with the tombo_helper function should return non-zero value

patbohn opened this issue · comments

commented

As mentioned in the title, when an error is raised via tombo_helper.error_message_and_exit() the sys.exit() call (see below) should return a non-zero value to ensure that errors are properly caught by workload managers.

tombo/tombo/tombo_helper.py

Line 361 in afdb4d8

sys.exit()